I should have used NixOS...

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dotfiles

Simple setup for i3, terminator, zsh with oh-my-zsh and a fancy polybar, screenshot to come.

Clone in bare repository : git clone --bare https://github.com/Chostakovitch/dotfiles.git $HOME/.cfg. A bare repository does not have a working tree (basically it is just .git content). So we avoid conflicts with another git repository.
Create a working tree outside .cfg : /usr/bin/git --git-dir=$HOME/.cfg/ --work-tree=$HOME checkout.
Adjust DEFAUT_USER in ~/.zshrc.
Source ~/.zshrc and use provided config alias to pull.
config config --local status.showUntrackedFiles no to ignore untracked files in status (better as it is home dir).

Credits to this great article for the trick.